mythos.utils.units

Units for the oxDNA model.

Attributes

ANGSTROMS_PER_OXDNA_LENGTH
ANGSTROMS_PER_NM
NM_PER_OXDNA_LENGTH
PN_PER_OXDNA_FORCE
JOULES_PER_OXDNA_ENERGY

Functions

get_kt(→ mythos.utils.types.ARR_OR_SCALAR)	Converts a temperature in Kelvin to kT in simulation units.
get_kt_from_c(→ mythos.utils.types.ARR_OR_SCALAR)	Converts a temperature in Celsius to kT in simulation units.
get_kt_from_string(→ float)	Converts a temperature string (e.g. '300K', '27C') to kT in simulation units.
from_kt(→ mythos.utils.types.ARR_OR_SCALAR)	Converts kT in simulation units to temperature in Kelvin.

Module Contents

mythos.utils.units.ANGSTROMS_PER_OXDNA_LENGTH = 8.518

mythos.utils.units.ANGSTROMS_PER_NM = 10

mythos.utils.units.NM_PER_OXDNA_LENGTH = 0.8518000000000001

mythos.utils.units.PN_PER_OXDNA_FORCE = 48.63

mythos.utils.units.JOULES_PER_OXDNA_ENERGY = 4.142e-20

mythos.utils.units.get_kt(t_kelvin: mythos.utils.types.ARR_OR_SCALAR) → mythos.utils.types.ARR_OR_SCALAR

Converts a temperature in Kelvin to kT in simulation units.

mythos.utils.units.get_kt_from_c(t_celsius: mythos.utils.types.ARR_OR_SCALAR) → mythos.utils.types.ARR_OR_SCALAR

Converts a temperature in Celsius to kT in simulation units.

mythos.utils.units.get_kt_from_string(temp_str: str) → float

Converts a temperature string (e.g. ‘300K’, ‘27C’) to kT in simulation units.

mythos.utils.units.from_kt(kt: mythos.utils.types.ARR_OR_SCALAR) → mythos.utils.types.ARR_OR_SCALAR

Converts kT in simulation units to temperature in Kelvin.