API Reference

This page contains auto-generated API reference documentation [1].

• mythos
  • mythos._version
  • mythos.energy
    • mythos.energy.base
    • mythos.energy.configuration
    • mythos.energy.dna1
      • mythos.energy.dna1.base_functions
      • mythos.energy.dna1.base_smoothing_functions
      • mythos.energy.dna1.bonded_excluded_volume
      • mythos.energy.dna1.coaxial_stacking
      • mythos.energy.dna1.cross_stacking
      • mythos.energy.dna1.fene
      • mythos.energy.dna1.hydrogen_bonding
      • mythos.energy.dna1.interactions
      • mythos.energy.dna1.nucleotide
      • mythos.energy.dna1.stacking
      • mythos.energy.dna1.unbonded_excluded_volume
    • mythos.energy.dna2
      • mythos.energy.dna2.base_functions
      • mythos.energy.dna2.coaxial_stacking
      • mythos.energy.dna2.debye
      • mythos.energy.dna2.interactions
      • mythos.energy.dna2.nucleotide
      • mythos.energy.dna2.stacking
    • mythos.energy.na1
      • mythos.energy.na1.bonded_excluded_volume
      • mythos.energy.na1.coaxial_stacking
      • mythos.energy.na1.cross_stacking
      • mythos.energy.na1.debye
      • mythos.energy.na1.fene
      • mythos.energy.na1.hydrogen_bonding
      • mythos.energy.na1.nucleotide
      • mythos.energy.na1.stacking
      • mythos.energy.na1.unbonded_excluded_volume
      • mythos.energy.na1.utils
    • mythos.energy.potentials
    • mythos.energy.rna2
      • mythos.energy.rna2.cross_stacking
      • mythos.energy.rna2.interactions
      • mythos.energy.rna2.nucleotide
      • mythos.energy.rna2.stacking
    • mythos.energy.utils
  • mythos.input
    • mythos.input.dna1
    • mythos.input.oxdna_input
    • mythos.input.sequence_constraints
    • mythos.input.sequence_dependence
    • mythos.input.toml
    • mythos.input.topology
    • mythos.input.trajectory
    • mythos.input.tree
  • mythos.losses
    • mythos.losses.observable_wrappers
  • mythos.observables
    • mythos.observables.base
    • mythos.observables.diameter
    • mythos.observables.melting_temp
    • mythos.observables.persistence_length
    • mythos.observables.pitch
    • mythos.observables.propeller
    • mythos.observables.rise
    • mythos.observables.rmse
    • mythos.observables.stretch_torsion
    • mythos.observables.wlc
  • mythos.optimization
    • mythos.optimization.objective
    • mythos.optimization.optimization
  • mythos.simulators
    • mythos.simulators.base
    • mythos.simulators.io
    • mythos.simulators.jax_md
      • mythos.simulators.jax_md.jaxmd
      • mythos.simulators.jax_md.utils
    • mythos.simulators.lammps
      • mythos.simulators.lammps.lammps_oxdna
    • mythos.simulators.oxdna
      • mythos.simulators.oxdna.oxdna
      • mythos.simulators.oxdna.utils
  • mythos.ui
    • mythos.ui.loggers
      • mythos.ui.loggers.aim
      • mythos.ui.loggers.console
      • mythos.ui.loggers.disk
      • mythos.ui.loggers.jupyter
      • mythos.ui.loggers.logger
      • mythos.ui.loggers.multilogger
  • mythos.utils
    • mythos.utils.constants
    • mythos.utils.helpers
    • mythos.utils.math
    • mythos.utils.neighbors
    • mythos.utils.types
    • mythos.utils.units

[1]

Created with sphinx-autoapi