All modules for which code is available
- builtins
- jaxlib.xla_extension
- mythos.energy
- mythos.energy.base
- mythos.energy.configuration
- mythos.energy.dna1
- mythos.energy.dna1.base_functions
- mythos.energy.dna1.base_smoothing_functions
- mythos.energy.dna1.bonded_excluded_volume
- mythos.energy.dna1.coaxial_stacking
- mythos.energy.dna1.cross_stacking
- mythos.energy.dna1.fene
- mythos.energy.dna1.hydrogen_bonding
- mythos.energy.dna1.interactions
- mythos.energy.dna1.nucleotide
- mythos.energy.dna1.stacking
- mythos.energy.dna1.unbonded_excluded_volume
- mythos.energy.dna2
- mythos.energy.dna2.base_functions
- mythos.energy.dna2.coaxial_stacking
- mythos.energy.dna2.debye
- mythos.energy.dna2.interactions
- mythos.energy.dna2.nucleotide
- mythos.energy.dna2.stacking
- mythos.energy.na1.bonded_excluded_volume
- mythos.energy.na1.coaxial_stacking
- mythos.energy.na1.cross_stacking
- mythos.energy.na1.debye
- mythos.energy.na1.fene
- mythos.energy.na1.hydrogen_bonding
- mythos.energy.na1.nucleotide
- mythos.energy.na1.stacking
- mythos.energy.na1.unbonded_excluded_volume
- mythos.energy.na1.utils
- mythos.energy.potentials
- mythos.energy.rna2.cross_stacking
- mythos.energy.rna2.interactions
- mythos.energy.rna2.nucleotide
- mythos.energy.rna2.stacking
- mythos.energy.utils
- mythos.input.oxdna_input
- mythos.input.sequence_constraints
- mythos.input.sequence_dependence
- mythos.input.toml
- mythos.input.topology
- mythos.input.trajectory
- mythos.input.tree
- mythos.losses.observable_wrappers
- mythos.observables.base
- mythos.observables.diameter
- mythos.observables.melting_temp
- mythos.observables.persistence_length
- mythos.observables.pitch
- mythos.observables.propeller
- mythos.observables.rise
- mythos.observables.rmse
- mythos.observables.stretch_torsion
- mythos.observables.wlc
- mythos.optimization.objective
- mythos.optimization.optimization
- mythos.simulators.base
- mythos.simulators.io
- mythos.simulators.jax_md.jaxmd
- mythos.simulators.jax_md.utils
- mythos.simulators.lammps.lammps_oxdna
- mythos.simulators.oxdna.oxdna
- mythos.simulators.oxdna.utils
- mythos.ui.loggers.console
- mythos.ui.loggers.disk
- mythos.ui.loggers.jupyter
- mythos.ui.loggers.logger
- mythos.ui.loggers.multilogger
- mythos.utils.helpers
- mythos.utils.math
- mythos.utils.neighbors
- mythos.utils.types
- mythos.utils.units